rs227570544 SNP Detail

Summary

• ID
  rs227570544
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152495943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAACACT CCAGACTCTT
  TAAGAGGACC CCTCTCCCAG ACCTCCTCAC AGCTACAGAG GGCACTGTCT GGCACATGAG
  TATCATTGGG GCAGTAGGAA CCATCAGTAA GGGTTCTCGG GACAGTTGTT GACTTGTCTC
  ATTAATTTTG TAACATCCCT TTGGTTTCCA ATTTGTTTCT CAATTTACAA CTGAAGGGAC
  T
  TTACACAATC TTTGAAATTA TCCAGATAGG GAGGGGCACA GACAAAAACA GAGATTTACC
  GTTATACCGA AGGTCAGCCT ACGCCAAGGT CTTGGTACAC TGGGTCCCTG CTGCCTGACA
  TCTCAGTTGA GCATCACTGC ATCTGGCCAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACTGAACTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562920	CHEV_2_152479759	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227570544					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152495943 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
Rr374088	regulatory region 374088	48 bp downstream
Rr567410	regulatory region 567410	452 bp distal
Rr567411	regulatory region 567411	22 bp proximal
Rr567412	regulatory region 567412	319 bp proximal
Rr567413	regulatory region 567413	1831 bp proximal
Tssr26849	transcription start site region 26849	230 bp downstream
Tssr26850	transcription start site region 26850	238 bp downstream
Tssr26851	transcription start site region 26851	265 bp downstream
Tssr26852	transcription start site region 26852	291 bp downstream