rs227556220 SNP Detail

Summary

• ID
  rs227556220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139303818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATACTGACA TGCTTTCTGC CCGCAGCCTG CTTGACAGTA
  GTGTCTACTC AGCTTTCTGA CTCGAGGAGG GGAAGGGTCT GTGCGTAGGT CTCAGGTCTG
  K
  GTGGGGGAGG GGCCCCTCTA GGCTCAGGCT CCAATCTCAG CTGAGTGTAA TTCTGGTTTT
  GTTGTCTTTA CTTATGAGGG AGTGGGGCCA TTCCTTTCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss363469119	MGP_WTSI_4_139132422	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs227556220					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363469119	MGP_WTSI_4_139132422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139303818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	522 bp distal
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	1777 bp distal
Rr603245	regulatory region 603245	1955 bp distal
Rr603246	regulatory region 603246	1862 bp distal
Tssr39955	transcription start site region 39955	1817 bp downstream
Tssr39956	transcription start site region 39956	1782 bp downstream