rs227533823 SNP Detail

Summary

• ID
  rs227533823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGCAGCC CACAAGGACT CCACACATGA
  TGAATATTTC ATTCTGATAG GATTCTAAGC TTTTGACTTC TTCATTTCTT CCTTTTTCAT
  ATTAGCCAAA CCTCTCCGGT AATGTTTACA TTACTTAATA GAATGCAAAT AATGAGATTT
  Y
  TTTTTTTTAG AAGTCTGTGT TTTAATCATA TGCTTACAGG TTAATCAGCT GTTTCTCTGT
  GAAATGATAA CTGCCTTCGT GGCTTTTCTC TCCCTTTTTT TGAGAATTAG ATGAAGTCAT
  CTATTCATAC ACCCAGTGTA CTGACACGCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766595	CHEV_3_52843609	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227533823					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	1401 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	1860 bp upstream
Rr576626	regulatory region 576626	948 bp proximal
Rr576627	regulatory region 576627	1752 bp proximal
Rr576628	regulatory region 576628	1907 bp proximal
Tssr29102	transcription start site region 29102	1830 bp upstream
Tssr29103	transcription start site region 29103	1943 bp upstream