rs227469387 SNP Detail

Summary

• ID
  rs227469387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132737201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAATTCA AGCAGTAAGG
  GTCTTCCTAT CCTTGGTAAA GGTGGGTGAG GCATTAGAGA TGGGCAGACC TGGGAGTCTC
  TCACACCCAT CAGCACTAAA GTTTGCCCTA TGGGCGGCAG TTATGGCAAG ACACCAAAAG
  TTCTGCTTGT GATGACCTCA GAGTTGAGTT TTGAAGCTAC AAAGGATCGC TAAAGCACCT
  Y
  CTGCTTTTAT TAATGCCCGT TCTTATCATA ATCAGTTCTT GGGGTTACTT TGTCTGCAAG
  CGAAGTGGCC CCTAGACAGA GGCCTCTCCA GCTGGCCACA TGTGCCACGA TGCCACATCA
  GTGGGTGTGC TTTTTAGAGC CTCCCCTGTT ACTTGCTTTC TGGAAAAGTT TCAATTGCTC
  TATAGGTAGG GACTGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338135	CHEV_4_132565805	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227469387					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132737201 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	1596 bp upstream
Cpgi14982	CpG island 14982	889 bp proximal
Gm36599	predicted gene, 36599	1738 bp upstream
Rr601150	regulatory region 601150	1709 bp distal
Rr601151	regulatory region 601151	1307 bp distal
Rr601152	regulatory region 601152	within coordinates
Rr601153	regulatory region 601153	553 bp distal
Rr601154	regulatory region 601154	1126 bp proximal
Rr601155	regulatory region 601155	1779 bp proximal
Rr601156	regulatory region 601156	1824 bp proximal
Tssr39436	transcription start site region 39436	1593 bp upstream
Tssr39437	transcription start site region 39437	1628 bp upstream
Tssr39438	transcription start site region 39438	1904 bp upstream