rs227453214 SNP Detail

Summary

• ID
  rs227453214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24716264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTCCTGG ACCCCCGCCT CAACTCCCCT TCCCATGCCC
  CCAAATAAAT TCTATTCTAT ACTAGAAAAA AATTAAAATG AATAAATCTT TTTTAATAAA
  Y
  GAAAGAAGGG AGGGGGGAGG GAGGGAGGCA GAGAGGGAGG GAGGGAGGAA GGAAGGGAGG
  GAGGGAGGGA GGGAGGGAGG GAGGGAGGGA GGGAGGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495925	CHEV_5_24017084	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227453214					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24716264 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608341	regulatory region 608341	336 bp distal
Rr608342	regulatory region 608342	428 bp distal
Rr608343	regulatory region 608343	248 bp distal
Rr608344	regulatory region 608344	916 bp proximal