rs227431804 SNP Detail

Summary

• ID
  rs227431804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTACAC CTAGCTGAAG
  GCAAAAGAGC GGGACCCCCC ACCCCCGCGT CACCAGCGGC TTCTGCCCTA CGAGGTCCCG
  AGGCAGAGGA AGCCCCCGCC GCGGCCGCAC TAAAGCGGCG CCCGGGAGGA TGCTGCTACC
  CGACTCCCCC TACGCCGGGC GCCTGCAACG CGCTCGGGCC GGCCTCTGCG CGGCTCCTGC
  Y
  AGCCCGCTCG GGGTTGGTGC GCGCCGCCGT CTGTCGCCCC GGCTCCTCCC CTTCGCCGTG
  CTCCCCTCCT CCTCTGCCTG TCCCACACCC GCCCTCCTCG CAGCTCCAGA CTCCCGCCGC
  CACCTCCTTA GGGGCTGGAG ATGCGACCCG GTTCAAGGAG GCGCTGCTAG GGCCTCCAGC
  CGTTAGTAGC AGAACAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100049	CHEV_9_95307743	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227431804					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289377 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	54 bp upstream
Gm35915	predicted gene, 35915	137 bp upstream
Gm37805	predicted gene, 37805	80 bp upstream
Rr684785	regulatory region 684785	1740 bp distal
Rr684786	regulatory region 684786	1536 bp distal
Rr684787	regulatory region 684787	1362 bp distal
Rr684788	regulatory region 684788	1339 bp distal
Rr684789	regulatory region 684789	1180 bp distal
Rr684790	regulatory region 684790	within coordinates
Rr684791	regulatory region 684791	42 bp proximal
Tssr86547	transcription start site region 86547	101 bp upstream
Tssr90904	transcription start site region 90904	205 bp upstream
Tssr90905	transcription start site region 90905	133 bp upstream
Tssr90906	transcription start site region 90906	112 bp upstream
Tssr90907	transcription start site region 90907	85 bp upstream
Tssr90908	transcription start site region 90908	48 bp upstream
Tssr90909	transcription start site region 90909	25 bp upstream
Tssr90910	transcription start site region 90910	within coordinates
Tssr90911	transcription start site region 90911	26 bp downstream
Tssr90912	transcription start site region 90912	443 bp downstream