rs227405085 SNP Detail

Summary

• ID
  rs227405085
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87654460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGTTCTG GTCCCTGCAT CTGCCAAAGC
  TGCTCGGGCC GGCCATCCTT GCTAGAGCCT TCTGCTTTGT GTTTCTTCAG TCAGAGTTCT
  GACCCATCTT AGAGAGTCTC AGGTTTGAAC ATCCCAGCAC CCTGGAAGTT CCCAAAGTAG
  K
  CACCCTGCCA CTTCTCATTC CTGCTGAGCC TCGAACCTGA AGGCCCGCCA CTGGACGGCC
  CTTCTCCCAG CTTTCTTCCC ACATCTCCAC CCAGCTAGCA TCCCAGGCTA GAAACCTGGG
  ACTCGGTCAT GCAGTGCAGG GTGACTCTCC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320835308	CHEV_3_87551075	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227405085					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87654460 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	1944 bp downstream
Rr579535	regulatory region 579535	1460 bp proximal
Rr579536	regulatory region 579536	1841 bp proximal
Tssr33946	transcription start site region 33946	1380 bp downstream
Tssr33947	transcription start site region 33947	1403 bp downstream
Tssr33948	transcription start site region 33948	1424 bp downstream
Tssr33949	transcription start site region 33949	1446 bp downstream
Tssr33950	transcription start site region 33950	1466 bp downstream