rs227396527 SNP Detail

Summary

• ID
  rs227396527
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5497360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCATTT CCCAGAGGCT
  CAGTGCATCC TACCCTACTT TGTTACTGCC CAATATTGAC CTCCCTAATG ACTGCTGTTG
  AAACATGCTA GCGGGTCATA ACACTCTCAT CCTAACCTCT CTCGTCCTCC CGTTCACTCT
  AAATGGACTG TAGAATGAAG CCAGTGTTTA GGGACGCTGT AACGACTTGG TTGCAAATGC
  W
  ATGTAATGGG AACTACTAAT AGTAATAAAC TGCAAGGGCA GTTTGTTATC CAAGGCACCC
  TTAGCCTTCG ACCCTTGCAT ATGAGGAGAC TGGGGTGTTA TGAAAGTCAT AGATGACGGT
  GGGTGCACTC TTTGCATTTT CCCCCATGAG AGCTCACCCA GTCACAGGAC TGATGTCTGA
  TTTCTGCCTC TAGTTCAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367251254	MGP_WTSI_6_5447360	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227396527					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367251254	MGP_WTSI_6_5447360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5497360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	720 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	1082 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	561 bp distal
Rr626153	regulatory region 626153	1356 bp proximal
Tssr59753	transcription start site region 59753	1508 bp upstream
Tssr59754	transcription start site region 59754	1479 bp upstream
Tssr59755	transcription start site region 59755	1428 bp upstream
Tssr59756	transcription start site region 59756	1070 bp upstream
Tssr59757	transcription start site region 59757	1044 bp upstream