rs227376198 SNP Detail

Summary

• ID
  rs227376198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:29014413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCACCTC TAAGAGCCTT
  GTTCTTTTCT GTGGCGTTGG CAATGGAACC CAGTGTTACA GTGTGACAGG TGAGTGCTCC
  TGAGTTACTT TCTTGCACAC TTTCCTTTAA AAAAAAAAAA AAAAGGAAAA AAAAAAAAAG
  AAAAAGAAAG AATGTTAACT TTTAATTTTT GGTTAATTTA GGCCTCCAAA TCGCTGACCT
  Y
  CAGGTCTGGA GTTGAAACCT CATCACACCC TTTCCTTTTT AAAAAAAAGA ATTATTTTAA
  TTTTAAAATT TTGGTGAATG TAATGTAGGC CTCGAAATCG CTTTCTGTAC GAGGCTGGCC
  TTTGGGCCTG GATGCGCTGG CTTTAAGCCT TCTGAGTACA GGGACCACAG GCTGCCGGGC
  TTGTAAAGTG ATTTGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353490616	MGP_WTSI_2_28979921	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227376198					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353490616	MGP_WTSI_2_28979921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29014413 () rs orientation: forward

Symbol	Name	Function Class
Gm75228	predicted gene, 75228	638 bp downstream
Gm75232	predicted gene, 75232	346 bp downstream
Rr367145	regulatory region 367145	502 bp upstream
Rr396845	regulatory region 396845	642 bp upstream
Rr553974	regulatory region 553974	1745 bp distal
Rr553975	regulatory region 553975	1455 bp distal
Rr553976	regulatory region 553976	86 bp distal
Rr553977	regulatory region 553977	46 bp proximal
Rr553978	regulatory region 553978	460 bp proximal
Rr553979	regulatory region 553979	602 bp proximal
Rr553980	regulatory region 553980	1646 bp proximal
Setx	senataxin	Intron
Tssr16983	transcription start site region 16983	1788 bp downstream
Tssr16984	transcription start site region 16984	1733 bp downstream
Tssr16985	transcription start site region 16985	1662 bp downstream
Tssr16986	transcription start site region 16986	1637 bp downstream
Tssr16987	transcription start site region 16987	1612 bp downstream
Tssr16988	transcription start site region 16988	1590 bp downstream
Tssr16989	transcription start site region 16989	235 bp downstream
Tssr16990	transcription start site region 16990	571 bp upstream
Tssr16991	transcription start site region 16991	742 bp upstream
Tssr16992	transcription start site region 16992	800 bp upstream
Tssr16993	transcription start site region 16993	815 bp upstream
Tssr16994	transcription start site region 16994	842 bp upstream
Tssr16995	transcription start site region 16995	915 bp upstream
Tssr16996	transcription start site region 16996	938 bp upstream
Tssr23305	transcription start site region 23305	409 bp downstream