rs227372853 SNP Detail

Summary

• ID
  rs227372853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121518278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGACTCT CACGTGTGTG GGGGACTAGC CCTGTTTGGA
  ATTTATTCAA ACCCTTCCTT GCGGCCTCTC CGACGGCTTC GGAAGAGTCC GGGACTCTCT
  R
  GCACCTTGGG CCCTCCTTCT GTGTCGTTTT AAAGTGGGCT TTCCCTGGAA TAGTTTAAAG
  GAGGACTTCA GGATCTTCAG CTCTTTCCAC GGATTGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320905175	CHEV_3_121427547	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227372853					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121518278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			313 bp distal
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1191 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			1126 bp distal
Rr584150	regulatory region 584150			1884 bp distal
Rr584151	regulatory region 584151			1082 bp distal
Rr584152	regulatory region 584152			910 bp distal
Rr584153	regulatory region 584153			409 bp distal
Rr584154	regulatory region 584154			876 bp distal
Tssr31453	transcription start site region 31453			1095 bp downstream
Tssr31454	transcription start site region 31454			1068 bp downstream
Tssr31455	transcription start site region 31455			1044 bp downstream
Tssr31456	transcription start site region 31456			1011 bp downstream
Tssr31457	transcription start site region 31457			182 bp upstream
Tssr35426	transcription start site region 35426			1220 bp upstream