rs227353189 SNP Detail

Summary

• ID
  rs227353189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134342275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC TCCTCCTCCC TAACGCCCCC
  M
  CCCCCAAAAA AAGTCCTGGC CCCGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321695455	CHEV_5_134789291	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227353189					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134342275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			1381 bp upstream
Gm71761	predicted gene, 71761			within coordinates
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr378666	regulatory region 378666			1348 bp upstream
Rr399401	regulatory region 399401			45 bp upstream
Rr621987	regulatory region 621987			1054 bp distal
Rr621988	regulatory region 621988			within coordinates
Rr621989	regulatory region 621989			344 bp proximal
Rr621990	regulatory region 621990			1251 bp proximal
Rr621991	regulatory region 621991			1392 bp proximal
Tssr1657	transcription start site region 1657			1535 bp downstream
Tssr49086	transcription start site region 49086			225 bp upstream
Tssr49087	transcription start site region 49087			252 bp upstream
Tssr49088	transcription start site region 49088			558 bp upstream
Tssr49089	transcription start site region 49089			1525 bp upstream
Tssr53628	transcription start site region 53628			872 bp upstream
Tssr53629	transcription start site region 53629			202 bp upstream
Tssr53630	transcription start site region 53630			366 bp downstream
Tssr53631	transcription start site region 53631			985 bp downstream
Tssr53632	transcription start site region 53632			1022 bp downstream
Tssr53633	transcription start site region 53633			1035 bp downstream
Tssr53634	transcription start site region 53634			1064 bp downstream
Tssr53635	transcription start site region 53635			1093 bp downstream
Tssr53636	transcription start site region 53636			1137 bp downstream
Tssr53637	transcription start site region 53637			1216 bp downstream
Tssr53638	transcription start site region 53638			1257 bp downstream