rs227291377 SNP Detail

Summary

• ID
  rs227291377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52813868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGTTCAC ATGGAGCACT GAGCCTGGCC
  ACCGGCTCTT GAGTTTGTGA CCCGATGCCT CTACTATCAT ATGCTTTTTG TAGTGCTTCA
  TGTTCCAGAC TATAAAGACT GGAAAAGCAC AGAACCACGT TACCCTAACA TTTTCTGTGG
  R
  Tttccttcct tccttccttc cttccttcct tccttccttc cttccttcct tcctccctcc
  ctccctccct ccctccctcc ctcccccctc TCACTCTCTC TCTCTTTGAC TTTTAATTGT
  CATAAATAAG TTTTGGCTAC ATCCTTTAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765868	CHEV_3_52710369	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227291377					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52813868 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	309 bp downstream
Rr576600	regulatory region 576600	818 bp proximal
Rr576601	regulatory region 576601	907 bp proximal