rs227278387 SNP Detail

Summary

• ID
  rs227278387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69554792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACAAAA ACACCTTAGG
  GACCCCACTC TTTAATTTTA ATAATGTGGA GTGTTATTAG TCATGTAATA GTTTACATTT
  CTCTCTGTTT AAAAGAAGCT AGTTGCTTAA CAGTTTCTTT AAGCTTTATT AAATTGATTG
  GGTTGTTCTG CTCACTCCCT AAGTAGGTTG GTGTGTGTGT ATGTATGTGT GTGTGTGTGT
  R
  TATATATATA TATCAAAAAT TGTATTTTTT ATTTCTGTAG GCCAAAATTT GGACCTTGAG
  ATGTGCAGGC AGTACTTCAA ATATTCAGAG AAGACTGCTA TAATTGGACC TTTGACTTTT
  ACTGACAAGG CGCATTTTTT GCTTTGTTTG AGGTCTTTGG CATTTTTAGG GCAAGCACCA
  CTGAGCTGTA TTCCTAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	LP/J	MA/MyJ	PL/J	SJL/J	SWR/J	WSB/EiJ
ss354377117	MGP_WTSI_2_69562505	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	LP/J	MA/MyJ	PL/J	SJL/J	SWR/J	WSB/EiJ
rs227278387					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377117	MGP_WTSI_2_69562505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69554792 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			704 bp distal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			1541 bp downstream
Rr558457	regulatory region 558457			1345 bp distal
Rr558458	regulatory region 558458			1654 bp distal
Rr558459	regulatory region 558459			633 bp distal
Tssr18132	transcription start site region 18132			1608 bp downstream
Tssr18133	transcription start site region 18133			1572 bp downstream
Tssr18134	transcription start site region 18134			1380 bp downstream
Tssr18135	transcription start site region 18135			1355 bp downstream
Tssr18136	transcription start site region 18136			1170 bp downstream
Tssr24445	transcription start site region 24445			1665 bp upstream