rs227274079 SNP Detail

Summary

• ID
  rs227274079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54494572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGTCTC GAATGATCTG
  CCTCCTTCAA AAGAAGAGCT CTAGATTTGA AGTGACTTGA TGTTTTGCAC TATGTGAGAG
  GACGTTCTTT AAAAAGTGAA TTGGTTCCCC ACCACCACCA CCTCTGTGAA ACGGATACTT
  AAAAAGTACA AGTAGTTACC TGTGATTGGT TTTTTTTTAA ATAGGATTTA GAAAATAAAT
  R
  TTATTTCAGT TTCAATTTGC TACATCCAGC ATTACTATTA AAATAAGCAA ATGTACATGA
  AATTAGATTA AGAAAAATAC AAACTCGCTC ATGCTACGCC TGTTTAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAAAAAAA CGCTAACTAT CTGCCTCAGA AGAGCTTTGC GAATGTAACA
  TTTGGTTTTA GCTGTGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772025	CHEV_3_54391073	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227274079					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54494572 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	143 bp proximal
Rr576812	regulatory region 576812	1097 bp proximal