rs227254456 SNP Detail

Summary

• ID
  rs227254456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59549232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCGGGCC GCTCCTCCGC
  TAGCCGGCGT CGCGCCCTGC TCCCCGGCCT CGGCGGGACG CGTCGCCGAG AGGAAACGAG
  GCCAGCGCAG CCCCGGAACG GCCACCCGGC ACTTACCCAT CCATGGCCCA GATGGAGGAG
  CGCGTTGTGC GGGGATTGAC GGGCTCACCG CGGGCGGAGA AAGCGGGCGG CGGCTCCGGG
  R
  AACCAGCGAG CGGAGCCGCT CCGCAGCTCC GGCCGGTCAG AGGTGGAAGG AAGAGTGGGA
  AACAGGGGCG GGGACCGGGC ACGCTCTCGC CAGCGCCGCG CCCCCGCCCT CCCGGCCCGC
  GAGCGCGTTC CCGCCTCGCC TGGCCCCGCC CCCTCGGCGT CGACGCCCTC CCGGGGCTCG
  GCTGGACTCC AGGGCGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361694533	MGP_WTSI_4_59562104	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227254456					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361694533	MGP_WTSI_4_59562104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59549232 () rs orientation: forward

Symbol	Name	Function Class
1700018M17Rik	RIKEN cDNA 1700018M17 gene	339 bp upstream
Cpgi14347	CpG island 14347	within coordinates
Ptbp3	polypyrimidine tract binding protein 3	mRNA-UTR
Rr593081	regulatory region 593081	1215 bp distal
Rr593082	regulatory region 593082	506 bp distal
Rr593083	regulatory region 593083	within coordinates
Rr593084	regulatory region 593084	807 bp proximal
Tssr41946	transcription start site region 41946	43 bp downstream
Tssr41947	transcription start site region 41947	82 bp downstream