rs227247983 SNP Detail

Summary

• ID
  rs227247983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102109496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCATTTT ACCTGGTTTG
  CCAATGAGTT CAACTCCCAT TCCCAGACTA ACTGCTCTTG GCCTGAGTCA TTAATTACCT
  CTGGAGCATC CCTGGCAGCT GGATAAGGGT TGCTGAGGAG CTGTGAGTGG TTACTGTCTC
  TAGGATGGGT ATTTCTTTTC AAGCAAAGCC TTTCCCCCTA GTAGATTCTG AAGCTTCAGC
  Y
  ACCGCCTGAT GCACACCACA CATCCCATGG TGTTCTAAGG GGGATCTGGG ATGAGGGTGG
  AGGCAGAGCA GCAGAGGATG GAGGCAGTTT GCTTCTGCCT CCAGGAGGAC ACAGAGTACC
  AGAAACAGCC CAGCCACAGC CACCGAATCT TGTCTTCCTC GTGGAAAGTG GCACAGTTAA
  CTGGCCACAG TTAGCTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854813	CHEV_3_102006103	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227247983					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102109496 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			1429 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			957 bp proximal
Rr582208	regulatory region 582208			1773 bp proximal
Rr582209	regulatory region 582209			1876 bp proximal
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant