rs227244702 SNP Detail

Summary

• ID
  rs227244702
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:74828086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTAGAG CAGGAGGCTG
  GGGGGTGGGG GTAGGGGTAG GGTCTGACCA GTTAGATTGA GGCTGGACCC TCCCCAGAGT
  GAGGAGCGGG AAGCTCTTTG TCTTATCCAG GATTTTGCAT ATCAATGCTG AGGTTCTGGT
  GATTAAGTAG GGTCCCTGGC TAGCGGGGGT AACCTGAACA ACCTTCCTCC GCTGGCCGCT
  W
  GCCAATAGAC ACCTGGCTTC CGCGGATGAG CCCTTTGAGT TTGTGGAGGT GTTCCTCAGG
  TCCCCAGGGC CCTGCCCCGT TGCCTGCAGA TGTGTGGACA GACAAAACAT TGGACTCGTT
  TTCCAACCAC TTCACCCCTT CCTTCGCTAG TCCTCCGGTG GACGATGGGA TGCCTCATTG
  ACTTGTTTGT GGCTGTGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394587207	MGP_WTSI_15_74786667	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227244702					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394587207	MGP_WTSI_15_74786667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74828086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm62552	predicted gene, 62552			705 bp upstream
Ly6e	lymphocyte antigen 6 family member E			Intron
				mRNA-UTR
Rr504405	regulatory region 504405			1041 bp distal
Rr504406	regulatory region 504406			716 bp distal
Rr504407	regulatory region 504407			574 bp distal
Rr504408	regulatory region 504408			within coordinates
Rr504409	regulatory region 504409			719 bp proximal
Tssr131611	transcription start site region 131611			608 bp downstream
Tssr131612	transcription start site region 131612			577 bp downstream
Tssr131613	transcription start site region 131613			316 bp downstream
Tssr131614	transcription start site region 131614			186 bp upstream
Tssr131615	transcription start site region 131615			881 bp upstream
Tssr131616	transcription start site region 131616			913 bp upstream
Tssr131617	transcription start site region 131617			926 bp upstream
Tssr131618	transcription start site region 131618			943 bp upstream
Tssr131619	transcription start site region 131619			979 bp upstream
Tssr131620	transcription start site region 131620			994 bp upstream
Tssr131621	transcription start site region 131621			1010 bp upstream
Tssr131622	transcription start site region 131622			1232 bp upstream
Tssr131623	transcription start site region 131623			1252 bp upstream
Tssr131624	transcription start site region 131624			1335 bp upstream
Tssr131625	transcription start site region 131625			1508 bp upstream
Tssr131626	transcription start site region 131626			1523 bp upstream
Tssr131627	transcription start site region 131627			1560 bp upstream
Tssr131628	transcription start site region 131628			1949 bp upstream
Tssr134815	transcription start site region 134815			730 bp upstream
Tssr134816	transcription start site region 134816			696 bp upstream