rs227233984 SNP Detail

Summary

• ID
  rs227233984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98693400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCAATTA GGAAGGCAGC
  CACATGATAC AGCCTGACTC CTGTGGCAGG CAAGCCAGGA AGTCTAGATC TTAACTCAGA
  TTTGCCTGTT GGTTTTTGTT GGTGTTTGTT GGAGTTTAAG GCATATCAGA CATTCTTAGG
  CCTTAGTTTC TTCACTCTTT GGTTTCATAA TACTGATCTA AAACTATAAT CCTAGGCGCG
  R
  TATTAATGAG GTATAACAGA AGCAGAGTTG CTTTGGTAAA GGTGGGTCAC ACAAAAGAGA
  TGGATTGGGC TAGAGAAATG GCTCAGAGCA TAAGAGTCCC TTTCAGAGGG GTCTGCATGT
  GGTTCCCACG CAGGCAGCTC CCAAGCACCT GTAACTCCAG CTCCAGACGA TGATCATGGC
  TGCCCAGGGC ACTTGCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321221742	CHEV_4_98471854	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227233984					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98693400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595791	regulatory region 595791			91 bp distal
Rr595792	regulatory region 595792			41 bp proximal