rs227205685 SNP Detail

Summary

• ID
  rs227205685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32698862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGCTTT TCCTTTTAAA
  GGGTCTTAGA ACCAGCCTGG GGCTGCAACT GACTAAAGCC AGCAACCGCG AGAATAGCTT
  GTCTGGTGTG AATGCCCAGA AGTGCGCTGG GCACGGGCGA TTTCCAACCG GCGCCTCCCC
  TGGGAACGCC GGGGGTCCCG GACGCGGTCC CTGAACGGCC GCTCGGAGGG GTCGTTAAGC
  R
  TGAACCGTAT TACTGAGTTT GATTAGGTGT TTACTGAAGC GTGTTCTCTA GCACGGTTTC
  AAAGTTAGCC AGTTGGGGGT GGGGAGGGAG AGATGTACGC AGATTGATAA AATGTCAGGT
  AGAACATGGG GTCCCGTGTA CATAAAAAGG ATGCCGTGGT TTGCTGATGA TTATGTAAGA
  AAAGCATGAG GATTGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395868183	MGP_WTSI_16_32878578	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227205685					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395868183	MGP_WTSI_16_32878578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32698862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fyttd1	forty-two-three domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr404782	regulatory region 404782			377 bp downstream
Rr514843	regulatory region 514843			737 bp distal
Rr514844	regulatory region 514844			352 bp distal
Rr514845	regulatory region 514845			within coordinates
Rr514846	regulatory region 514846			596 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein			741 bp upstream
Tssr138060	transcription start site region 138060			661 bp downstream
Tssr138061	transcription start site region 138061			629 bp downstream
Tssr138062	transcription start site region 138062			598 bp downstream
Tssr138063	transcription start site region 138063			397 bp downstream
Tssr138064	transcription start site region 138064			371 bp downstream
Tssr140832	transcription start site region 140832			857 bp upstream
Tssr140833	transcription start site region 140833			818 bp upstream
Tssr140834	transcription start site region 140834			777 bp upstream
Tssr140835	transcription start site region 140835			750 bp upstream