rs227201358 SNP Detail

Summary

• ID
  rs227201358
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134641806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCCGGAG AAACGTAACT CATCTTAATT
  TCACAGATAA AACCTGAATT AAATACAACT CGCTCACAGT GAACACCCCA GATCTCACAT
  GACTCCCTAA GGAAGGCGAT TTCAGTTTTA GCCGCCTCTA AACAAGCTAA AGGGAAAAAC
  K
  GATAGACTTT TGTGATGAGT TCGGGTCTGA AAATACACTC GTTTTTATCT AATGATTGGA
  AAGAAAAGCA ACCCACTATG TGTAATTGTC GGTTCCCCCA ATGGCCCACC CGAGTCCATT
  TTTCGTTGCA CAATTCTTTG ACATTTTCAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321349934	CHEV_4_134470410	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227201358					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134641806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	64 bp proximal
Rr601858	regulatory region 601858	568 bp distal
Rr601859	regulatory region 601859	827 bp distal
Rr601860	regulatory region 601860	within coordinates
Rr601861	regulatory region 601861	510 bp proximal
Tmem50a	transmembrane protein 50A	Intron
Tssr39578	transcription start site region 39578	594 bp upstream
Tssr43943	transcription start site region 43943	445 bp downstream
Tssr43944	transcription start site region 43944	480 bp downstream
Tssr43945	transcription start site region 43945	515 bp downstream