rs227179726 SNP Detail

Summary

• ID
  rs227179726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117232141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGCTGAT GGGAAACATC
  TGGTAAACTG AAAACTGATA TGATAAAGCT GCCTTAAGGA TGATCTGGAC AGCCTATGTT
  GCCCCATCTG TTATTGGTTG CTGCCAACAT GCATATGAGA AACGGCTAAG AAGCCTGTGA
  GATGGCTCAG TGGGTTGGAG GCATTTTCTA ACAATTCTCA TGACCTGAGT TTGATCTCTG
  R
  ACCCTACGTA GTGAAAGAGA GAACAAACTC ACACAAGTTG CCCTCTGATC TCGATAGAGG
  GAGGGGAGGG AAAGGAAGAA GAGAAAGAGG AAGAAAAAGA GGAAGACCAG CTAAGAAGGA
  GGAGGAAGAG GAGGAGACCA GCTAGCTGCT CTGATGGGAA AGAGATCCAT GATCCTGGCA
  GTCAGGCCTG CCCTCTGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321279266	CHEV_4_117047549	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227179726					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117232141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			within coordinates
Rr598134	regulatory region 598134			50 bp distal
Tssr42980	transcription start site region 42980			509 bp downstream
Tssr42981	transcription start site region 42981			527 bp downstream
Tssr42982	transcription start site region 42982			551 bp downstream