rs227176695 SNP Detail

Summary

• ID
  rs227176695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63321139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGAGCCTG GGAGGAACTA ACAAGGGGCC
  AGGCTATTAC TGACTCTCAT CTTGTCCTAC TGTAGCTCTA AGCTGGCTTC CTGGCCCCCA
  CTTTGTCCCT GCCCTTATTT GGGTAGGAGG GTGTCATCTC CTGGCCTGTT CCTCACTTCC
  R
  AACATCTCGA GACCCTCAGT AACCCAAGCA CTAACTGGCC TTGAGATGAG CCCACCCCGG
  GGGACAGAGA GGGACCAACA CGGGTCCAAG TTCACCAAGG GAACCAAATT GGATCTGGAA
  CTGGAAACTA GCATCTTGGG GTCCACTCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321145088	CHEV_4_63063936	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227176695					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63321139 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Gm52742	predicted gene, 52742	776 bp downstream
Rr593542	regulatory region 593542	442 bp proximal
Rr593543	regulatory region 593543	1943 bp proximal
Tssr42040	transcription start site region 42040	1201 bp upstream
Tssr42041	transcription start site region 42041	343 bp downstream
Tssr42042	transcription start site region 42042	367 bp downstream
Tssr42043	transcription start site region 42043	375 bp downstream
Tssr42044	transcription start site region 42044	428 bp downstream
Tssr42045	transcription start site region 42045	459 bp downstream