rs227172667 SNP Detail

Summary

• ID
  rs227172667
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141455701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTCCTT CCTCCCAGCT
  TTCTTTTCAA GACGGGGGGG AAAGCTTTCT CTGTCACACG CTACCACCAC CTTTATGGTG
  TTCTGCTTCA CCATGCCCCC CATGCTAATG GAACAAATGG ATTCAAACCC TTCTGTCCAT
  GAGCCAAAGG CGACTAAGCC TCCTTTAAGT TGGCATCTCC AGGTAATTGC TCACAACAAT
  T
  AAAAGTTGAC TTTTAAAAGC CTGATGTGGT GGCACATACC ACTAGCTTCA ACACTTGGGA
  AGCAGAGGCA GGTGGGTTTC TGTGAATTCC AGTACAGCCT AGGCTACATA GTGAGATACT
  GAAAGTTTTT GTTTGTTTGT TTGTTTGTTT GTTTTGTATT TACATATGAG TGTTTTGCCT
  GTAGCTATGT ATGTGCACTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389324	CHEV_4_141284305	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227172667					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141455701 () rs orientation: forward

Symbol	Name	Function Class
Gm34863	predicted gene, 34863	1113 bp upstream
Rr603867	regulatory region 603867	678 bp proximal
Rr603868	regulatory region 603868	1162 bp proximal