rs227162918 SNP Detail

Summary

• ID
  rs227162918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95903004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACGGCTC GCGCAAGGGC
  GGGCGCCTAC CTCCTTCTCG GAGACGTAGA GCTGGTCGCC TTTCAGCACC ACATAGCGGT
  TTTTCCAAAT CTCCCTGAAA ATCCCTTTCC CGCAGAATTT CCGGACCCAG CCGACCTTCT
  CGGGCGCCGC AGACTGATGG TTTCCATCCG GAGGCCCCTG CCCGGGGCGA GACGAGGAGC
  R
  GCGGCTCAGA CTGGTCTCTG CGCCCTCCCC GCCCCCCCCG CCAGCCCCAG CCCCATTGTC
  CGCGCGCCGC GCACTCACCC GCTTGCCGGA GCCGCTCTTC TTCATGGCGG GATCGGGCGG
  CCGCGCCCGC TGCTCGCTCG GCGGCTCGTG CTAGCCGCAG GCCGGGCCCC CGCTGCCCCC
  GCCGCCCCCG TCGCCCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358911531	MGP_WTSI_3_95799615	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227162918					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358911531	MGP_WTSI_3_95799615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95903004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm9052	predicted gene 9052			299 bp upstream
Gm65578	predicted gene, 65578			1411 bp downstream
Plekho1	pleckstrin homology domain containing, family O member 1			Coding-NonSynonymous
				Intron
Rr581114	regulatory region 581114			1192 bp distal
Rr581115	regulatory region 581115			1685 bp distal
Rr581116	regulatory region 581116			within coordinates
Rr581117	regulatory region 581117			1628 bp proximal
Tssr30672	transcription start site region 30672			1650 bp downstream
Tssr30673	transcription start site region 30673			1570 bp downstream
Tssr30674	transcription start site region 30674			293 bp upstream
Tssr30675	transcription start site region 30675			414 bp upstream
Tssr30676	transcription start site region 30676			453 bp upstream
Tssr34577	transcription start site region 34577			1973 bp upstream
Tssr34578	transcription start site region 34578			33 bp upstream
Tssr34579	transcription start site region 34579			within coordinates
Tssr34580	transcription start site region 34580			6 bp downstream
Tssr34581	transcription start site region 34581			99 bp downstream
Tssr34582	transcription start site region 34582			118 bp downstream
Tssr34583	transcription start site region 34583			143 bp downstream
Tssr34584	transcription start site region 34584			244 bp downstream
Tssr34585	transcription start site region 34585			307 bp downstream
Tssr34586	transcription start site region 34586			1620 bp downstream