rs227146440 SNP Detail

Summary

• ID
  rs227146440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54536007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATCTTT TGTGAGAACA
  GCATGGTAAT AATATATTTT AACAATACAG ATATGCAGAG ATAAATCTAA TAGCTTAAAT
  TTGCCAAAAA AGCAAAAAAA ACTGACCCAG GCTGAACTTG AACTCCCTGT GTAGCCAAGA
  ATGACTCTGA AATCCTAATT CTCCTGCCTC TACATGCTGA TTACAGATGT ACTTGCCACA
  Y
  GCAGTGGTTT TATGTTGTAT CAGGGAGGGA TGCCACCCAG AGATTGTACA TGCTAGGAAA
  ACACTCTACA AAATGAGACA CATCACCAGT CCAATTAGCC AGTCTTGTGC AAATATCGTA
  TTGTGAACGT CCACAAACCA AGACAAGTCA GTCACTACTT GACTTGGCAT CTTGATGCAA
  TCTTGACTCA AAGTAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772237	CHEV_3_54432508	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227146440					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54536007 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	1762 bp proximal