rs227139387 SNP Detail

Summary

• ID
  rs227139387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116486531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCTTTAA TCTCAGCACT
  CAGGAGGCAG ACTGGTCTCC CTGGATTTGA ACCCAGAATG TTTTACAGAG CTAGTTCTAA
  GACAGCACAC CTGTTTCAGC ACTCCAAAGG CAGAAGCTGT TGAGGCAACC TAATCTATGT
  AAGGAATTCC AACACAGCCA AGGCTTCATA GTGAGATCTT GTTTCCAAAA AAAAAAAAAA
  W
  TTTTGTCCGG CAGTGGTGGC ACATGCCTTT AGTCCCAGCA CTTGGGAGTT CGAAGCCAGC
  CTGGTCTACA GAGTGAGTTC CAGGACAGCC AGGGCCACAC AGAGAAACCC CTGTCTCAGA
  AAAACAAAAC AAAACAACAA CAACAAAAAA AAACCCACAA ACTTTGATCT TTTAAATTAT
  GTATACAAAT ATAGATTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277631	CHEV_4_116301939	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227139387					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116486531 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	647 bp downstream
Cpgi14636	CpG island 14636	1820 bp distal
Gm69034	predicted gene, 69034	1390 bp upstream
Nasp	nuclear autoantigenic sperm protein (histone-binding)	mRNA-UTR
Rr398404	regulatory region 398404	1639 bp downstream
Rr398405	regulatory region 398405	1170 bp downstream
Rr597936	regulatory region 597936	1867 bp distal
Rr597938	regulatory region 597938	903 bp distal
Rr597939	regulatory region 597939	447 bp distal
Tssr42894	transcription start site region 42894	1937 bp upstream
Tssr42895	transcription start site region 42895	1831 bp upstream
Tssr42896	transcription start site region 42896	1426 bp upstream
Tssr42897	transcription start site region 42897	1378 bp upstream
Tssr42898	transcription start site region 42898	1346 bp upstream