rs227127124 SNP Detail

Summary

• ID
  rs227127124
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGCAGCCT ATAAGCTACA GTGTGGTGGG AGTGTGGACT
  TCAGAAGCGC AGAGTGTTTC AAAAGCATGT TGATAGGGAG TTTCAACACA GTATTTAGAT
  T
  AGCGGTGTTC TCTTTGAGAA TTTCATTGGG TTTATATATT GCACAGTCTT CCTAACATTC
  CTTCATGTCA TATTGAAAGA GTTGTTGCTG TTTGCTTAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320783884	CHEV_3_58686404	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227127124					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789903 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	within coordinates
Rr577289	regulatory region 577289	387 bp proximal
Rr577290	regulatory region 577290	974 bp proximal