rs227072192 SNP Detail

Summary

• ID
  rs227072192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109985902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTGCCC ACTTTGGGGT
  CAATTTTCTT CTGGTCCACA GGCCTGCCTT GGGTACAACC CTACTTTCTG ACACCTCTAC
  CACTGAGTTT CCACAGTGTA TTCTCATTAT TAATTTTCCT TACTAGCTCA TACAGGATCT
  TGGTTGATTC TCTTTGCTAT CTTTAACATC TGGATTGTGG TTCACACTTA CAACTATATG
  Y
  ATATAGATAA GTTGTGTTGA GACTCTTCCA GAGTTCCATA GGCCTTGTAT GAATGGAGTA
  TTCGGCGAGG GTCACGGCAT AGGAGAAGAT ATACCCAACC CCTCGCCTTG CAAAGCAAAT
  CAGATACACT GTCCATGAAG CAGAGTTAAG GACCCTTTTC AATGACATGG CTGTTGGTGA
  GAAAATGAGG TTTCAGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255084	CHEV_4_109801310	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227072192					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109985902 () rs orientation: forward

Symbol	Name	Function Class
Rr597402	regulatory region 597402	315 bp distal
Rr597403	regulatory region 597403	264 bp proximal
Rr597404	regulatory region 597404	375 bp proximal