rs227065008 SNP Detail

Summary

• ID
  rs227065008
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118829594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCATCA GGTCAGCCAT
  CAGCAGGGAT CACATACTCG CACAGGGGGA AGAGGCATAA GACCTTCCTG TCCAGTTTCT
  TCCTGGTTAA GCCTGCTGTC ATCCCTCCCT AATGATGCTG CTGGACCCAC CAAGCTCAGC
  CCTTTGCATG ATGAACCAAC CAGGAACACC AGTTCTGCTT TCTGCAACCG TTTACAATTT
  C
  CTTCCTCTTG TACACACTAG CAGTCAGTGA AATGTTGCTC CCTAATTCCC CTGTCTCCAG
  GGTAAACATC TATAACTTCC TTTGTAGTTC TGATATAACA AGGTTTCTAG TTGACCCTGC
  AGGATCCCTC CCTGCCTATG ATCAAACAAG ACCACCAGAA GCTTGGAAGA AAATATCCCA
  GCCATATTTG GCTTGCACAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321926246	CHEV_6_118802651	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227065008					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118829594 () rs orientation: forward

Symbol	Name	Function Class
1700080F18Rik	RIKEN cDNA 1700080F18 gene	within coordinates
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	Intron
Rr637542	regulatory region 637542	1217 bp distal