rs227053043 SNP Detail

Summary

• ID
  rs227053043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59836765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caagtgtgt tactgatgcc agtagagggc
  agaagagggt gttggctccc ctgttattgg agttacagac tgttgtgagc tgccatgtgg
  gtgctgggaa ttgaactctg atcctcttgg aagggcagca agtgttctta tccactgagc
  Y
  atgtctccag ccACCCCTAA TTTAAGAAAT ACTAGGAAAT GAATGTACTG GTTATGATAA
  AATGCACCAT TTAGCATCTC TGGATGTTAT TATATTTTTC TGCATTAATT AATTGATTAT
  TTCCCCCCtt tttctgtttt gagacagggt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141510	CHEV_4_59849637	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227053043					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59836765 () rs orientation: forward

Symbol	Name	Function Class
Rr593157	regulatory region 593157	1139 bp distal
Rr593158	regulatory region 593158	105 bp distal
Rr593159	regulatory region 593159	972 bp proximal
Snx30	sorting nexin family member 30	Intron