rs227042955 SNP Detail

Summary

• ID
  rs227042955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATTCA TAAGCATGTA
  TGTACACACA CACACACACA CACACACACA TCTAATTCCT AAATATAACC TCTTCAGTCT
  GGATAATGTT ATATATACAT AATGATATGT ATATTTTCAG GGATGACCAT TTGGCCTTGA
  ACAACTAATT GGTGTGCTCT TCCCTGGGGA CGAGCACCTC CTCCATTCCT GGCATTCCTC
  Y
  GTTTTTTAGA GTTCCTTGTG TATGGCTGAG CCTTGTGGAC CTTTCTTCAT CCAGTTTGGC
  ATCCAGTCCA CTGATGTCAT CCTCACTCAG CTCGTGCAGT CGTGCATGGG ACTTAATAGT
  AGCTTCTGAT ATTGCTAGGA GACACAATTT CCAAACAAAC TCCCTGATCT TCTTGCATTT
  ATGATCTTTC TGCCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439073	CHEV_2_102428948	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227042955					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419136 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	361 bp downstream
Rr561706	regulatory region 561706	1168 bp proximal
Rr561707	regulatory region 561707	1400 bp proximal