rs226962686 SNP Detail

Summary

• ID
  rs226962686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107183331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGGTCG GTCTGAACTG
  CAATGTGACA AAGTGCAACT AGACTTCATA TTTTAAGGAC TTAAGATGGG AGAAAAATAA
  TGTATTTTTT AAAAGTAATT ATATATTGAA ATAACTTCTT AGATACACAA AATCATGTTA
  AAATTAATTT CTTCTGTTTT CCTTATGTGG CTCCCAGGTT ATTTAAAACT ACAAAGGGGG
  Y
  TCACATTATA TCTGTTTGAA TAGTAATGTG GAGGTTCAGA AAGGCAGAAC TGGGCTAAGG
  GTAAAGCTCA GGCATAGAGT ACTTACCTAG CCTGAGTAAA GTCCTAGGTA AGCCAGATGC
  TTGGCGCTTA ACAGAACAAG ACAGAATGGT CAAACCAAGC GGTCTCAATT CAGTAACATT
  TTTACCACTT GAGACCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320865175	CHEV_3_107078933	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226962686					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107183331 () rs orientation: forward

Symbol	Name	Function Class
Rr582951	regulatory region 582951	1755 bp distal
Rr582952	regulatory region 582952	1971 bp distal
Rr582953	regulatory region 582953	191 bp proximal