rs226956302 SNP Detail

Summary

• ID
  rs226956302
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151946575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGTTGG TTCCTTATAG
  CCTTTAAAAA AAAAAAAAAA GCAAGCCGGG GGGGGGGGGG GGGGCGTGGT GGCGCAAGCC
  TTTAATCCCA GCAGAGGAGG CAGAGGCAGG TGGATTTCTG AGTTCGAGGC CAGCCTGGTC
  TACAAAGTGA GTTCCAGGAC AGCCAGGGCT TCAGAGAAAC CCTGTCTTGA AAAACAAAAA
  M
  CAAAACAAAC AAAAAAGGCT GGTTCTTCAA ATGGAGCCAA ATGGGGTTTA TACTGTCCTT
  TCAACATCAG CTTCTCGAAT GGAATATTAC AGAGACGATG ATGTACAGGA TCCAGGTTGA
  CTTGGAAGTG GCTCAGCCTC TCTAGGGACA CTCATTGTTG GAAACCACGC ACCAGGCTAG
  GAGGAAGCAC AAGTCACAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562164	CHEV_2_151930391	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226956302					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151946575 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	22 bp downstream
Cpgi12438	CpG island 12438	353 bp proximal
Gm31475	predicted gene, 31475	1491 bp upstream
Rr567286	regulatory region 567286	1662 bp distal
Rr567287	regulatory region 567287	28 bp proximal
Rr567288	regulatory region 567288	791 bp proximal
Rr567289	regulatory region 567289	853 bp proximal
Rr567290	regulatory region 567290	1005 bp proximal
Rr567291	regulatory region 567291	1447 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	861 bp upstream
Tssr20767	transcription start site region 20767	147 bp upstream
Tssr20768	transcription start site region 20768	259 bp upstream
Tssr20769	transcription start site region 20769	1067 bp upstream
Tssr20770	transcription start site region 20770	1601 bp upstream
Tssr26780	transcription start site region 26780	712 bp downstream
Tssr26781	transcription start site region 26781	1385 bp downstream