rs226928834 SNP Detail

Summary

• ID
  rs226928834
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82939636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTTTCA TGCTAGACTG
  TACGTTCCTT GGGGGCAGGG ACTTGACCAT GTGTCTATTT CTGTAATTCC CAAATGCCTA
  ACAGTGCAGT CATTTCTCAA TAAATACATT TTAAATAAAT GAACAAATTC TGCCGAAACT
  CAGTTCTGAG TCTGTTTAAC CGAATTCATT CAAAACGTGT GCGATTGTAA TACCCAACCC
  M
  CTAACCTTAA ATTTAGTGTA TGTTGCAGTT GACATTTAGA TCAGGTTAAA AACTGTGTTC
  CATTAGTATG GACTGATGAA TGCTTAGCTA GCTTTAAACT ATCATTTGAG ATTAGCATGG
  ACACGTAAGA TTTCAAATCC ATTTGAAGAG AGGTTGCTAA AGGATGAGTA TCCTTTACCT
  GCTAAAAAAT TACATCTCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676721	MGP_WTSI_3_82836251	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226928834					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676721	MGP_WTSI_3_82836251	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82939636 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fga	fibrinogen alpha chain			Intron
				mRNA-UTR
Rr375250	regulatory region 375250			624 bp downstream
Tssr917	transcription start site region 917			628 bp downstream
Tssr29671	transcription start site region 29671			1484 bp downstream
Tssr29672	transcription start site region 29672			1391 bp downstream
Tssr29673	transcription start site region 29673			1344 bp downstream
Tssr29674	transcription start site region 29674			1310 bp downstream
Tssr29675	transcription start site region 29675			1304 bp downstream
Tssr29676	transcription start site region 29676			1290 bp downstream
Tssr29677	transcription start site region 29677			1275 bp downstream
Tssr29678	transcription start site region 29678			1200 bp downstream
Tssr29679	transcription start site region 29679			1141 bp downstream
Tssr29680	transcription start site region 29680			1117 bp downstream
Tssr29681	transcription start site region 29681			1015 bp downstream
Tssr29682	transcription start site region 29682			984 bp downstream
Tssr29683	transcription start site region 29683			953 bp downstream
Tssr29684	transcription start site region 29684			914 bp downstream
Tssr29685	transcription start site region 29685			868 bp downstream
Tssr29686	transcription start site region 29686			779 bp downstream
Tssr29687	transcription start site region 29687			726 bp downstream
Tssr29688	transcription start site region 29688			701 bp downstream
Tssr29689	transcription start site region 29689			677 bp downstream
Tssr29690	transcription start site region 29690			649 bp downstream
Tssr29691	transcription start site region 29691			599 bp downstream
Tssr29692	transcription start site region 29692			581 bp downstream
Tssr29693	transcription start site region 29693			554 bp downstream
Tssr29694	transcription start site region 29694			508 bp downstream
Tssr29695	transcription start site region 29695			495 bp downstream
Tssr29696	transcription start site region 29696			474 bp downstream
Tssr29697	transcription start site region 29697			447 bp downstream
Tssr29698	transcription start site region 29698			297 bp downstream
Tssr29699	transcription start site region 29699			240 bp downstream
Tssr29700	transcription start site region 29700			229 bp downstream
Tssr29701	transcription start site region 29701			197 bp downstream
Tssr33800	transcription start site region 33800			1206 bp upstream
Tssr33801	transcription start site region 33801			843 bp upstream
Tssr33802	transcription start site region 33802			719 bp upstream