rs226908608 SNP Detail

Summary

• ID
  rs226908608
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCCTAA ATGGAATTCA
  GACACCCTGC TTGATTTTTT TCCTGGCTCA TCTAGTCACC TTTCACATTC TTTGTTACAA
  CCAAATAACA CTGCTCCTCC GAGTTGTCCT GTGTCCTTCC ACACTAGCCT TTCAGCATTC
  TGAAGGCAGA GACTGGTTCT ATCACATGGC CCATTCAGTA GACATGTGCT AAACATAATA
  W
  TAGACAAAAT ACTAAATTTG GTCTAGGCAC AGAGGTAGGT GGCTCGCGTG TCATACATAA
  AGCTCTGGAT TTCTCAACAC TGAAAATAAA GAACCTACCT GAAAAATGGG GAACTAAAAA
  TTCAAGAGAA TTTAGAAGCC CTGGAGAGCT GACTCAGTGG TTAAGAGCAC TGGTTGCTCT
  CACAGAGGAC CTGGGTTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911132	CHEV_6_113572227	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226908608					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1438 bp proximal
Rr636555	regulatory region 636555	1348 bp proximal
Tssr58233	transcription start site region 58233	1755 bp upstream
Tssr58234	transcription start site region 58234	1815 bp upstream
Tssr58235	transcription start site region 58235	1893 bp upstream
Tssr62461	transcription start site region 62461	1295 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1761 bp upstream