rs226819090 SNP Detail

Summary

• ID
  rs226819090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132651780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccatgtga ccctgtcttt aaaaacaaaC
  AAGCAAAAaa ccccacagcc agggaggcag aggcaggtgg atcttgataa attatttctc
  catccatgaa acaagccaaa ttcaagccag attacattat attaaatgga ggtttattgg
  K
  ctctctggca agttcactgg ccccaaggat taaggccagg ggagtcacca tgagggcaaa
  ggtcagggga gagaaagagg aaaaatggtg agcagagaaa gaagagaagg aggaggggag
  gaggaggagg gaggaggaga gggagggagg                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337439	CHEV_4_132480384	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226819090					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132651780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	1259 bp distal
Fam76a	family with sequence similarity 76, member A	1931 bp upstream
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1489 bp downstream
Rr601111	regulatory region 601111	1987 bp distal
Rr601112	regulatory region 601112	1421 bp distal
Rr601113	regulatory region 601113	1946 bp distal
Rr601114	regulatory region 601114	1720 bp distal
Tssr43727	transcription start site region 43727	1925 bp upstream
Tssr43728	transcription start site region 43728	1906 bp upstream
Tssr43729	transcription start site region 43729	1868 bp upstream
Tssr43730	transcription start site region 43730	1856 bp upstream
Tssr43731	transcription start site region 43731	1843 bp upstream
Tssr43732	transcription start site region 43732	1838 bp upstream