rs226801242 SNP Detail

Summary

• ID
  rs226801242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113053772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGCGGCG GGTAAAACGA
  CTCCCCCAGA GGAAGGGGAG GGTGGGCGGC CGCTCGCGCG CGAGCTACTT TCGCTGACCC
  TCCCTCCCCT CCCCCGCCCC GCCAGAGGCC GACCGCGCCC GCACGTCCAG CTCGCCTCAC
  CCCACCTACC TCCCGCCCCA CCCAGTGGGC AGAGCGAGGC TGCCGGCGGC TGCGCACTCC
  R
  GCTGCCGTTA ACTGACAGGC GCCTTACGCC AACCAAAACA CGCCATTTGT GTTTTCACAC
  ACGGCGGGAG GAAAAGAAGC CAATCAGCGA CGAGACGTCG GCCGGAAGCG CTCCTCCGCT
  GCCCCCCCCC CCCCGAGCCA TGGCCGCGTC CGGTGGAGAC TTTTCCGCTC CCTTCTCCCT
  CCCCCTCCGG TTGCTGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369705672	MGP_WTSI_6_113026805	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226801242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369705672	MGP_WTSI_6_113026805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113053772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636449	regulatory region 636449	424 bp distal
Rr636450	regulatory region 636450	within coordinates
Rr636451	regulatory region 636451	491 bp proximal
Rr636452	regulatory region 636452	503 bp proximal
Rr636453	regulatory region 636453	839 bp proximal
Setd5	SET domain containing 5	554 bp upstream
Tssr58166	transcription start site region 58166	543 bp upstream
Tssr58167	transcription start site region 58167	576 bp upstream
Tssr58168	transcription start site region 58168	644 bp upstream
Tssr58169	transcription start site region 58169	756 bp upstream
Tssr58170	transcription start site region 58170	820 bp upstream
Tssr62428	transcription start site region 62428	484 bp upstream
Tssr62429	transcription start site region 62429	370 bp downstream
Tssr62430	transcription start site region 62430	426 bp downstream