rs226769893 SNP Detail

Summary

• ID
  rs226769893
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69164931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTATTA CTAATATATA
  TGTATATATG AGTACATATA ACATGAATAT ATACATGTTA GTATATATAA GTATATTAGT
  ATTATTATGT ACTAACTAGT ATATACTAAC ATGTTATATA CTAATAATAT ATGCTTATAT
  ATAAGTATAT CAGTATAAAT ATAACATCAC ATACATGCAT ATGTTGTAGA ATATATTATT
  T
  AATTAGCATA TATTATATAT AGTGTGTAGA ATATATGTAT AACATGTAAT ATACTATATA
  TTTATGTATT TTATATACAC ATTTATATAT TCTATGTACT ATATACTAAT TATATTATAA
  TGATATTTAT ATTTATATAT ATTATAAATT AGTAATATAC AATACATAGG CATGTAGATG
  TGAAACTCCA TATTTTACTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ZALENDE/EiJ
ss358318608	MGP_WTSI_3_69061520	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ZALENDE/EiJ
rs226769893					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358318608	MGP_WTSI_3_69061520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69164931 () rs orientation: forward

Symbol	Name	Function Class
Gm40070	predicted gene, 40070	within coordinates
Rr397716	regulatory region 397716	205 bp downstream
Rr578151	regulatory region 578151	146 bp distal
Rr578152	regulatory region 578152	343 bp distal