rs226769668 SNP Detail

Summary

• ID
  rs226769668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164248725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACATCAC AATTTGATTC
  ATTTTCATTA TTATTAATAA TATCGTTTAT TTTGTTATAT TTTGGGGGGG ATAAGACAGA
  CTCTAACTCT AGCTCAGGCG GAACCTATAC CAATCCTCCT GCCTCAGAGG CCCCATCCCT
  TCCGTACTGG GTTTAGGATT ACAAACGTGA GCCACCACAC CCAACTTAAT TTAACTGTTA
  Y
  TTCTTTCCAG ATTATTTATG TATTTTATAT ATGTGTGTGT ATTTTGTCTA CATGCATGCC
  TGTACACTAG AAGAGGGCAT TGGATCCCAT TACAGATGGT TGTGAGCCAC CATGTGGTTG
  CTGGGAGTTG AACTCAGAAC CTCTGGAAGA GCAGCCAGGG CTCTTAACTG CTGAGCCGTC
  TCTCCTACCC CTTGACTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605785	CHEV_2_164232305	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226769668					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164248725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12657	CpG island 12657			1807 bp distal
Cpgi12658	CpG island 12658			1037 bp proximal
Matn4	matrilin 4			1645 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569599	regulatory region 569599			1701 bp distal
Rr569600	regulatory region 569600			1412 bp distal
Rr569601	regulatory region 569601			871 bp proximal
Rr569602	regulatory region 569602			1093 bp proximal
Tssr21580	transcription start site region 21580			1508 bp downstream
Tssr27452	transcription start site region 27452			1981 bp upstream
Tssr27453	transcription start site region 27453			1948 bp upstream