rs226750462 SNP Detail

Summary

• ID
  rs226750462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154799200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCGGGAG CACACTTAGC
  ACGCACGCGC ACTCCAAACC CCGCCCCGCC CCGCCCCGCC CCGCCTCCTC CATGCTCTCC
  ACGTCACCGC GGCCCTGGAA GCGCCCTGAG ACTTGAAAAG CTAGGATGGC GTGAGCGTGC
  GCAAGCGGCG TTTCCTGGGC AACGATCTGT GGGGCAGATG GGCGGGCACC TAGCGGGGTC
  R
  GGTTGTGCGG AGCTCTGGGT TCCTGCCTTA CCGTGTCTGA CAACCCGCGG TGCGACCGAG
  AAGACCAACC CACCCACCAT TAGTGGATCC ACCACCCAGA TGCTGAGGTG ACCTGCCCGC
  ACGGAGCTCC TATTCCTGTC AGAAGCCTCC CAGGGAGGCC AGGCCCCTGA ACCAGAGAGA
  GGCTCGGCTC TGTGGGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360335695	MGP_WTSI_3_154756527	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226750462					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360335695	MGP_WTSI_3_154756527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154799200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13973	CpG island 13973	within coordinates
Fpgt	fucose-1-phosphate guanylyltransferase	176 bp upstream
Gm26456	predicted gene, 26456	1435 bp downstream
Gm37482	predicted gene, 37482	1302 bp upstream
Lrriq3	leucine-rich repeats and IQ motif containing 3	mRNA-UTR
Rr398138	regulatory region 398138	13 bp downstream
Rr587919	regulatory region 587919	171 bp distal
Rr587920	regulatory region 587920	within coordinates
Rr587921	regulatory region 587921	36 bp proximal
Tssr32470	transcription start site region 32470	88 bp downstream
Tssr32471	transcription start site region 32471	19 bp downstream
Tssr32472	transcription start site region 32472	within coordinates
Tssr32473	transcription start site region 32473	24 bp upstream
Tssr36282	transcription start site region 36282	323 bp upstream
Tssr36283	transcription start site region 36283	178 bp upstream