rs226740490 SNP Detail

Summary

• ID
  rs226740490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41354439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAAGAGCC TAGTAGAATC ATAACTGTGG
  GGAGGTGACG GGGAAAATCA CACACATTCA GACAACACAA ATTCCAAAAG GCCTTTCCAA
  AAGAGACTAA GTCAATTCCA AGTTACAGAT ATCTTCACTT TGTTGTGATC GATTTTTTTT
  K
  GGGGGGGGGG GATTTAATGT CTGCTCCTGA TGGATCTGTA CGCATGTCAG GGAAGCTCAG
  GCGGTTTTCC TTGGTTCTTT ATAGGATAAG TCGTCCTACA TGCTTACATG TGGGCATAGA
  ATGAAATGGG TGTACTCTAT GGGACGTTTT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325809400	CHEV_19_41440490	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226740490					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41354439 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1461 bp upstream
Rr547615	regulatory region 547615	127 bp distal
Rr547616	regulatory region 547616	377 bp proximal
Rr547617	regulatory region 547617	1143 bp proximal