rs226717862 SNP Detail

Summary

• ID
  rs226717862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72592769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAAGAA GTGGCTGCTC
  TCTGCACTGG TGTTTCCAGA ACTGTCCTTA TAAAGATCAT CCTTCTCATT CTTCATAGAG
  TCTGTAAGTG TCCCCTCTTG GTTCTCACTG GAGGAAGGGC CCGGCACCTT TTCATTCTCT
  TCTTCAAGTG GTGAGCCTTC TTCCGGCTCT GTGTCACCCT CTTCAATCTC CTTGGTTTCC
  R
  CGTCTTCAGT AGGCTCTGAA GACTTATCTC CTTTCTCTGG CTTTAAAGAG AAGTCAGAGT
  CCCCTGCCAG TGTTTCCCCA GATTCAGTTT TGGAAGTAAG TGTTGGTTTT TGTCCTTTTT
  CAGTTGGCTG GACTTTGTCA GTCTTCGAAG TCTCCGTATC TGGGGAGATT TTGGAGGTGG
  GCTTGTCCAA ATCAACTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368753283	MGP_WTSI_6_72565780	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226717862					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368753283	MGP_WTSI_6_72565780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72592769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	352 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	987 bp upstream
Rr399708	regulatory region 399708	856 bp upstream
Rr632243	regulatory region 632243	290 bp distal
Rr632244	regulatory region 632244	497 bp proximal
Rr632245	regulatory region 632245	950 bp proximal
Rr632246	regulatory region 632246	1042 bp proximal
Rr632247	regulatory region 632247	1204 bp proximal
Tgoln1	trans-golgi network protein	Coding-NonSynonymous
Tssr57152	transcription start site region 57152	1069 bp upstream
Tssr61478	transcription start site region 61478	939 bp downstream