rs226701642 SNP Detail

Summary

• ID
  rs226701642
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19364551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATTTAACC CAACTAAAGA GCTGAGCCAA
  GGACGTCACA Gaaaaaaatt tttttttttt taatGTTCAA CAGCAACTGG TGTTGGGCCA
  TCGGAAACAA AGTCCTTTGT GAATGCTCAT CAGTGGTTTC TGAACTAAAG CCGCCTTTAT
  S
  AAGCGAGAAA ACTGATTGGA AACCATCAAC TTTGCACACT AGTTCCTGAC ACCTAGGCCC
  CTTCCCTACA AAGCAGCAGT TCGCAGTTCG GGTGAGGACC ACAATGGGAC CACTAGGCCT
  ATTGTTCTGA GAAACTCAGC ACCCGCAGCG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678391	CHEV_3_19210387	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226701642					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19364551 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110037C07Rik	RIKEN cDNA 3110037C07 gene			495 bp upstream
Cpgi13002	CpG island 13002			57 bp proximal
Gm66414	predicted gene, 66414			1250 bp upstream
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573969	regulatory region 573969			within coordinates
Rr573970	regulatory region 573970			925 bp proximal
Rr573971	regulatory region 573971			1261 bp proximal
Tssr28510	transcription start site region 28510			305 bp upstream
Tssr28511	transcription start site region 28511			461 bp upstream
Tssr28512	transcription start site region 28512			1053 bp upstream
Tssr28513	transcription start site region 28513			1094 bp upstream
Tssr32696	transcription start site region 32696			856 bp downstream
Tssr32697	transcription start site region 32697			882 bp downstream
Tssr32698	transcription start site region 32698			946 bp downstream
Tssr32699	transcription start site region 32699			962 bp downstream
Tssr32700	transcription start site region 32700			1002 bp downstream
Tssr32701	transcription start site region 32701			1805 bp downstream