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rs226701642 SNP Detail
Summary
  • ID
    rs226701642
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:19364551 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      AATTTAACC CAACTAAAGA GCTGAGCCAA
    GGACGTCACA Gaaaaaaatt tttttttttt taatGTTCAA CAGCAACTGG TGTTGGGCCA
    TCGGAAACAA AGTCCTTTGT GAATGCTCAT CAGTGGTTTC TGAACTAAAG CCGCCTTTAT
    S
    AAGCGAGAAA ACTGATTGGA AACCATCAAC TTTGCACACT AGTTCCTGAC ACCTAGGCCC
    CTTCCCTACA AAGCAGCAGT TCGCAGTTCG GGTGAGGACC ACAATGGGAC CACTAGGCCT
    ATTGTTCTGA GAAACTCAGC ACCCGCAGCG                                 
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320678391 CHEV_3_19210387 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs226701642 SNP C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19364551 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene 495 bp upstream
Cpgi13002 CpG island 13002 57 bp proximal
Gm66414 predicted gene, 66414 1250 bp upstream
Pde7a phosphodiesterase 7A Intron
Noncoding-Transcript-Variant
Rr573969 regulatory region 573969 within coordinates
Rr573970 regulatory region 573970 925 bp proximal
Rr573971 regulatory region 573971 1261 bp proximal
Tssr28510 transcription start site region 28510 305 bp upstream
Tssr28511 transcription start site region 28511 461 bp upstream
Tssr28512 transcription start site region 28512 1053 bp upstream
Tssr28513 transcription start site region 28513 1094 bp upstream
Tssr32696 transcription start site region 32696 856 bp downstream
Tssr32697 transcription start site region 32697 882 bp downstream
Tssr32698 transcription start site region 32698 946 bp downstream
Tssr32699 transcription start site region 32699 962 bp downstream
Tssr32700 transcription start site region 32700 1002 bp downstream
Tssr32701 transcription start site region 32701 1805 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory