AATTTAACC CAACTAAAGA GCTGAGCCAA GGACGTCACA Gaaaaaaatt tttttttttt taatGTTCAA CAGCAACTGG TGTTGGGCCA TCGGAAACAA AGTCCTTTGT GAATGCTCAT CAGTGGTTTC TGAACTAAAG CCGCCTTTAT S AAGCGAGAAA ACTGATTGGA AACCATCAAC TTTGCACACT AGTTCCTGAC ACCTAGGCCC CTTCCCTACA AAGCAGCAGT TCGCAGTTCG GGTGAGGACC ACAATGGGAC CACTAGGCCT ATTGTTCTGA GAAACTCAGC ACCCGCAGCG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss320678391 | CHEV_3_19210387 | CHEVERUD | SCREENING_POP | f | SNP | C | G |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
||||
rs226701642 | SNP | C | G |
Location: Chr3:19364551 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
3110037C07Rik | RIKEN cDNA 3110037C07 gene | 495 bp upstream | ||||||
Cpgi13002 | CpG island 13002 | 57 bp proximal | ||||||
Gm66414 | predicted gene, 66414 | 1250 bp upstream | ||||||
Pde7a | phosphodiesterase 7A | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr573969 | regulatory region 573969 | within coordinates | ||||||
Rr573970 | regulatory region 573970 | 925 bp proximal | ||||||
Rr573971 | regulatory region 573971 | 1261 bp proximal | ||||||
Tssr28510 | transcription start site region 28510 | 305 bp upstream | ||||||
Tssr28511 | transcription start site region 28511 | 461 bp upstream | ||||||
Tssr28512 | transcription start site region 28512 | 1053 bp upstream | ||||||
Tssr28513 | transcription start site region 28513 | 1094 bp upstream | ||||||
Tssr32696 | transcription start site region 32696 | 856 bp downstream | ||||||
Tssr32697 | transcription start site region 32697 | 882 bp downstream | ||||||
Tssr32698 | transcription start site region 32698 | 946 bp downstream | ||||||
Tssr32699 | transcription start site region 32699 | 962 bp downstream | ||||||
Tssr32700 | transcription start site region 32700 | 1002 bp downstream | ||||||
Tssr32701 | transcription start site region 32701 | 1805 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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