rs226685728 SNP Detail

Summary

• ID
  rs226685728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109374321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAAGTA CTTGACTGAC
  TGAACTATTT CCAAAGTCTA AAACCTTCTT TGTACAGCTT TTGCTATTAG GGAGTGTCAA
  TTAGGAGGAA GCCTGAGAAG CCAGCTAATT AGCCACATGA TTTTGGGAGT GTCCTTGGCT
  TACAGCCCTG TGTTATTATA TACTTTTACT ACCTGTATAT AATCTCAAAA CCATTATTCA
  Y
  ATTATTTATA TGTATATAAG TTTACATTGA TTATCATATA AATATATATT TAAATCAATG
  ACACATATAT TGCTTTTATT GTTTTGTTGT TTTTGTGGTT AAATCCCAGA GATCCATACA
  TATCATTTAA GTTCATATTT ATACATTCCA GATAATACTA CCATATAATA ATTATAGTTT
  ATTAGCTGTC TGCCTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869291	CHEV_3_109269923	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226685728					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109374321 () rs orientation: forward

Symbol	Name	Function Class
Rr583417	regulatory region 583417	242 bp proximal
Rr583418	regulatory region 583418	557 bp proximal
Vav3	vav 3 oncogene	Intron