rs226669421 SNP Detail

Summary

• ID
  rs226669421
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137494266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATTCCAG TACTTGGGAG CTGGAGGCAG AAGGGTCCAG
  GAGTTCAAGG ACATCCTGAG CTACTGTGTT GTCAACAGAC TCCAGAATCA CCCAGGAGAT
  K
  GGCCTTTGAG TGTGCCTGTG GGGGATTATT AAGATTAAAC TTAATTTCAG AGATCTGGTG
  ACAGCATTCC CAGGCCAGAG TACAGGGTAA GGAGAAAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367249	CHEV_4_137322870	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226669421					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137494266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			529 bp upstream
Rr602708	regulatory region 602708			540 bp distal
Rr602709	regulatory region 602709			296 bp distal
Rr602710	regulatory region 602710			1873 bp proximal
Tssr44134	transcription start site region 44134			511 bp upstream
Tssr44135	transcription start site region 44135			489 bp upstream
Tssr44136	transcription start site region 44136			454 bp upstream