rs226643037 SNP Detail

Summary

• ID
  rs226643037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:134273750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGGGC TGGAGAAGCC
  TAGGGCCCCT ACCTCCACTC TAGGCCCACA CCCAGGTTTG GAGGATTTTT CCCTGCGTTG
  TGAACACTGG AGCTGAGCTC CACCTGTGCT TGGCCGACCT TTCAGAGGCC CATGGCAGAG
  CTGGGAAGGG CTGTTAGAGT CCCATCTATT TAATTTGGGA TGAGGGTCCT ACTTAGGATG
  R
  CTTCAGGGTG TGGGAGGTTT TCTCTTGGGG TTGCCCAGGA CTGTTGAAAG AACAGCTAGA
  AGAGTGGCAG GGGCAAGCAG AAAGCCAGAT AGTCGGGGTG CAGTTGAGGA AGGAGGGCCC
  TGCAGAGGAC TCCCGGGTAG TGGAGAAACT TGCCCCCTGT GCTTTACCCT TGTAGCATAG
  TAATGGGAGC TGCTGGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457603	CHEV_7_141863704	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226643037					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134273750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19845	CpG island 19845			344 bp distal
Dock1	dedicator of cytokinesis 1			Intron
				Noncoding-Transcript-Variant
Rr656984	regulatory region 656984			1324 bp distal
Rr656985	regulatory region 656985			within coordinates
Rr656986	regulatory region 656986			1958 bp proximal
Tssr69616	transcription start site region 69616			1360 bp downstream
Tssr69617	transcription start site region 69617			1306 bp downstream