rs226602879 SNP Detail

Summary

• ID
  rs226602879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106644958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGGAGC CCCTGGGCCA
  CGAATAAACC ATCTTCAATA AATTGCTTTT GTTCAAGGCC AAACATCATC AGGGCCCAGT
  GAGAACCTGG AGATTGAGCC TGGAGGGGTT TCCCGTGGTG CCCCTGGAGA CTGAACCTGG
  ACCAGTTCCG TAGAGCCCCA TGCTGCACCA AATGGCAGGA ATGAGGACGG GCCTGGTCAT
  Y
  AGCAGGCTGA CAAAAAAGCC AAGCAGGGGA CCCTGCATCC AGCGCTTCTG TCACTGTCCC
  CTGGGTTTAG ATTGATTATG GGCTGGGCTG GTTCTACCTT AATAGCTGTT TATGTGAAAA
  CAGCCTCATG ATTTCATCCA TCCACAAACT CAACTGTGGC AACTCCTACC GTAACCAAAG
  CATAGCGCTG TGGTGGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321247235	CHEV_4_106460366	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226602879					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106644958 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	936 bp distal
Rr596809	regulatory region 596809	within coordinates
Rr596810	regulatory region 596810	187 bp distal
Rr596811	regulatory region 596811	1942 bp proximal