rs226574338 SNP Detail

Summary

• ID
  rs226574338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTGCTG CCAAGGAATT
  GGCTGGGGGG CAGGGGCAGG AGGGCTTCCC TCTGCTCTTT TCTTCCCCTC CCCCACAGGT
  ACCCTCTTAA AACATCTTCT GTTATCTCCT GGCTCTGTGG ACTTTAGATG GACTCAACTC
  CCTCTCCCTG GGCCTCAGAA AGCAAAGTGC AAAGTCACAG AGCAGTCAGC TCACCTGCCA
  K
  ACTGGTTTTG CCGAACAAGC TTGCTCCTCA GAAATGGAGG TAGAAAGGAT AGCCAGGACA
  TCAGAGGCCC ACCTGTTCTT CAGAGAATCC TGGAATCCCT GACTGTATCT CTTTTCAGGG
  TCACCTCAAA CCTAAGCCTG TAGGTTCTGA TTCCAACTCT GCCACCCTGG AGACTAGACA
  CGAGTAACTT AGTAAAGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss361714301	MGP_WTSI_4_62164347	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs226574338					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714301	MGP_WTSI_4_62164347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	803 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	Noncoding-Transcript-Variant
Rr593325	regulatory region 593325	1048 bp distal
Rr593326	regulatory region 593326	547 bp distal
Tssr42008	transcription start site region 42008	1131 bp upstream
Tssr42009	transcription start site region 42009	1087 bp upstream
Tssr42010	transcription start site region 42010	1053 bp upstream