rs226535746 SNP Detail

Summary

• ID
  rs226535746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85430563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACAGCCCA CAGTCTGGGT TCAAGCCCCA
  CGTGGGTGCT AGTGGTGTTC AGTGAGGACA GCAGTGGGCG CCCTCTGTCC TCTACGCTGA
  TGCTATCCCT TGGGTCCTCA GGGCACCAAC CCCAGAAGGT GGCTCGGCGA GTGTTCACCA
  M
  CAGCCGTGAG CGCTGGCGGC AGCAGCACGT TAACGGCGCC TTCGCAGAGC TCAGGAAGCT
  GCTGCCCACC CACCCGCCCG ACCGGAAGCT GAGCAAGAAC GAGGTGCTGC GCCTGGCCAT
  GAAGTATATA GGCTTCCTGG TGCGGCTGCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322751402	CHEV_8_87227833	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226535746					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85430563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			Coding-NonSynonymous
				mRNA-UTR
Nfix	nuclear factor I/X			Intron
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			583 bp upstream
Rr666586	regulatory region 666586			450 bp distal
Rr666587	regulatory region 666587			76 bp distal
Rr666588	regulatory region 666588			652 bp proximal
Tssr78439	transcription start site region 78439			519 bp downstream
Tssr82117	transcription start site region 82117			1192 bp downstream
Tssr82118	transcription start site region 82118			1228 bp downstream
Tssr82119	transcription start site region 82119			1256 bp downstream
Tssr82120	transcription start site region 82120			1333 bp downstream
Tssr82121	transcription start site region 82121			1880 bp downstream