rs226529947 SNP Detail

Summary

• ID
  rs226529947
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG CTCACTGCCC CCCAGCAGGG
  K
  TTCCCATCCT CGGGAGACTC AACAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss641191289	FVB_NJ_6_117122214	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	T	G	G	G	G	G	T	G	T	G	G	G	G	T	G	T	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226529947					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	T	G	G	G	G	G	T	G	T	G	G	G	G	T	G	T	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641191289	FVB_NJ_6_117122214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149157 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1573 bp distal
Rr637288	regulatory region 637288	235 bp proximal
Rr637289	regulatory region 637289	1670 bp proximal
Rr637290	regulatory region 637290	1855 bp proximal
Rr637291	regulatory region 637291	1906 bp proximal
Tssr58392	transcription start site region 58392	709 bp downstream
Tssr58393	transcription start site region 58393	690 bp downstream
Tssr58394	transcription start site region 58394	650 bp downstream
Tssr58395	transcription start site region 58395	1296 bp upstream
Tssr58396	transcription start site region 58396	1312 bp upstream
Tssr58397	transcription start site region 58397	1350 bp upstream
Tssr58398	transcription start site region 58398	1376 bp upstream
Tssr58399	transcription start site region 58399	1398 bp upstream
Tssr58400	transcription start site region 58400	1426 bp upstream
Tssr58401	transcription start site region 58401	1462 bp upstream
Tssr58402	transcription start site region 58402	1493 bp upstream
Tssr58403	transcription start site region 58403	1511 bp upstream
Tssr58404	transcription start site region 58404	1530 bp upstream
Tssr58405	transcription start site region 58405	1572 bp upstream
Tssr58406	transcription start site region 58406	1602 bp upstream
Tssr58407	transcription start site region 58407	1633 bp upstream
Tssr58408	transcription start site region 58408	1700 bp upstream
Tssr58409	transcription start site region 58409	1722 bp upstream
Tssr58410	transcription start site region 58410	1744 bp upstream
Tssr58411	transcription start site region 58411	1760 bp upstream
Tssr58412	transcription start site region 58412	1787 bp upstream
Tssr58413	transcription start site region 58413	1800 bp upstream
Tssr58414	transcription start site region 58414	1833 bp upstream
Tssr58415	transcription start site region 58415	1848 bp upstream
Tssr58416	transcription start site region 58416	1863 bp upstream
Tssr58417	transcription start site region 58417	1917 bp upstream
Tssr58418	transcription start site region 58418	1950 bp upstream
Tssr58419	transcription start site region 58419	1969 bp upstream
Tssr58420	transcription start site region 58420	1996 bp upstream
Tssr62617	transcription start site region 62617	1360 bp downstream
Tssr62618	transcription start site region 62618	1382 bp downstream
Tssr62619	transcription start site region 62619	1418 bp downstream
Tssr62620	transcription start site region 62620	1461 bp downstream
Tssr62621	transcription start site region 62621	1527 bp downstream